plot_comp

Plots the effect of varying compensation from 0 to 1 for each cell subclass,
examining the minimum subclass output result following a call to
<code>deconvolute()</code>. For this function to work, the argument <code>plot_comp</code> must be
set to <code>TRUE</code> during the call to <code>deconvolute()</code>.

Deconvolution of bulk RNA-Sequencing data into proportions of cells based on a reference single-cell RNA-Sequencing dataset using high-dimensional geometric methodology.

Myles Lewis

cellGeometry

Geometric Single Cell Deconvolution

Rachel Lau

plot_comp function

<dl><dt>x</dt>
<dd>An object of class 'deconv' generated by <code>deconvolute()</code>.</dd>
<dt>overlay</dt>
<dd>Logical whether to overlay compensation curves onto a single
plot.</dd>
<dt>mfrow</dt>
<dd>Optional vector of length 2 for organising plot layout. See
<code><a href="/link/par()?package=cellGeometry&version=0.5.7" data-mini-rdoc="cellGeometry::par()">par()</a></code>. Only used when <code>overlay = FALSE</code>.</dd>
<dt>...</dt>
<dd>Optional graphical arguments passed to <code><a href="/link/plot()?package=cellGeometry&version=0.5.7" data-mini-rdoc="cellGeometry::plot()">plot()</a></code>.</dd></dl>

Arguments

Plot compensation analysis — plot_comp

<dl>

<dt>x</dt>
<dd>An object of class 'deconv' generated by <code>deconvolute()</code>.</dd>


<dt>overlay</dt>
<dd>Logical whether to overlay compensation curves onto a single
plot.</dd>


<dt>mfrow</dt>
<dd>Optional vector of length 2 for organising plot layout. See
<code><a href='https://rdrr.io/r/graphics/par.html'>par()</a></code>. Only used when <code>overlay = FALSE</code>.</dd>


<dt>...</dt>
<dd>Optional graphical arguments passed to <code><a href='https://rdrr.io/r/graphics/plot.default.html'>plot()</a></code>.</dd>

</dl>

plot_comp: Plot compensation analysis

Description

Usage

Value

Arguments