Produces scatter plots using base graphics to compare actual cell counts against deconvoluted cell counts from bulk (or pseudo-bulk) RNA-Seq. Mainly for use if ground truth is available, e.g. for simulated pseudo-bulk RNA-Seq data.
plot_set(
obs,
pred,
mfrow = NULL,
show_zero = FALSE,
show_identity = FALSE,
cols = NULL,
colour = "blue",
title = "",
cex.title = 1,
...
)No return value. Produces scatter plots using base graphics.
Observed matrix of cell amounts with subclasses in columns and samples in rows.
Predicted (deconvoluted) matrix of cell amounts with rows and
columns matching obs.
Optional vector of length 2 for organising plot layout. See
par().
Logical whether to force plot to include the origin.
Logical whether to show the identity line.
Optional vector of column indices to plot to show either a subset
of columns or change the order in which columns are plotted. NA skips a
plot space to introduce a gap between plots.
Colour for the regression lines.
Title for page of plots.
Font size for title.
Optional arguments passed to plot().