violin_plot

Produces violin plots using ggplot2 showing amounts of cell subclasses in
deconvoluted bulk samples.

Deconvolution of bulk RNA-Sequencing data into proportions of cells based on a reference single-cell RNA-Sequencing dataset using high-dimensional geometric methodology.

Myles Lewis

cellGeometry

Geometric Single Cell Deconvolution

Rachel Lau

violin_plot function

<dl><dt>x</dt>
<dd>matrix of deconvolution results with samples in rows and cell
subclasses or groups in columns. If a 'deconv' class object is supplied the
deconvolution values for the cell subclasses are extracted and plotted.</dd>
<dt>percent</dt>
<dd>Logical whether to scale the matrix rows as percentage.</dd>
<dt>order_cols</dt>
<dd>Character value specifying with cell types are ordered by
mean abundance.</dd></dl>

Arguments

Cell subclass violin plot — violin_plot

<dl>

<dt>x</dt>
<dd>matrix of deconvolution results with samples in rows and cell
subclasses or groups in columns. If a 'deconv' class object is supplied the
deconvolution values for the cell subclasses are extracted and plotted.</dd>


<dt>percent</dt>
<dd>Logical whether to scale the matrix rows as percentage.</dd>


<dt>order_cols</dt>
<dd>Character value specifying with cell types are ordered by
mean abundance.</dd>

</dl>

violin_plot: Cell subclass violin plot

Description

Usage

Value

Arguments