Learn R Programming

cellGrowth (version 1.16.0)

Fitting cell population growth models

Description

This package provides functionalities for the fitting of cell population growth models on experimental OD curves.

Copy Link

Version

Version

1.16.0

License

Artistic-2.0

Maintainer

Julien Gagneur

Last Published

February 15th, 2017

Functions in cellGrowth (1.16.0)

readYeastGrower

Read Yeast Grower data files
readGenios

Read Tecan Genios data files
plot.well

Generic plot function for datatype well
bandwidthCV

Bandwidth cross-validation
standardWellId

Make standard names for well ids
wellDataFrame

Create a well data frame
baranyi

Baranyi growth model
gompertz

Gompertz growth model
getRowColumn

Convert well ids to row and column
getWellIdsTecan

Get aliases for wells
guessCellGrowthParams

Guess growth models parameters
rosso

Rosso growth model
plot.cellGrowthFit

Generic plot function for datatype cellGrowthFit
fitCellGrowth

Fit growth curves
fitCellGrowths

Fit multiple growth curves
logistic

Logistic growth model
plotPlate

Plot of a well plate