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cellHTS (version 1.36.0)
Analysis of cell-based screens
Description
Analysis of cell-based RNA interference screens
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Version
1.42.0
1.40.2
1.38.0
1.36.0
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Version
1.36.0
License
Artistic-2.0
Homepage
http://www.dkfz.de/signaling
Maintainer
Ligia Bras
Last Published
December 9th, 2007
Functions in cellHTS (1.36.0)
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getLibraryPlate
384-well plate assay format to a 96-well plate library format
screenMatch
Matching the gene annotation of two screens
summarizeChannels
Normalization and transformation of dual-channel data
configure
Configures the plates and plate result files
Bscore
B score normalization
ROC
Creates an object of class "ROC" which can be plotted as a ROC curve
readPlateData
Read a collection of plate reader data files
writeTab
Write the data from a cellHTS object to a tab-delimited file
writeReport
Create a directory with HTML pages of linked tables and plots documenting the contents of a cellHTS object
getEnVisionRawData
Read a plate file obtain from EnVision Plate Reader
annotate
Annotates the gene IDs of a given cellHTS object
normalizeChannels
Normalization of dual-channel data and data transformation
bdgpbiomart
Dataset with annotation of CG identifiers
normalizePlates
Plate-wise data normalization, and data transformation
plotSpatialEffects
Plate plot with the row and column offsets estimated by the B score method
print.cellHTS
Printing cellHTS objects
summarizeReplicates
Summarizes between normalized replicate values given in a cellHTS object, obtaining a single z-score for each probe
write.tabdel
Wrapper to function 'write.table' used to write data to a tab-delimited file
KcViab
A sample cellHTS object - D. melanogaster genome-wide RNAi screen
plotPlateLibrary
Plate plot of the raw data of the four consecutive 96-well plates of a given 384-well plate
KcViabSmall
A sample cellHTS object - D. melanogaster genome-wide RNAi screen
oneRowPerId
Rearrange dataframe entries such that there is exactly one row per ID.
getMatrix
Create a matrix with replicate data in columns
imageScreen
Experiment-wide quality control plot of a cellHTS object