cellity (version 1.0.2)

feature_generation: Helper Function to create all features

Description

Helper Function to create all features

Usage

feature_generation(counts_nm, read_metrics, GO_terms, extra_genes, organism)

Arguments

counts_nm

Gene expression counts dataframe (genes x cells). Either normalised by library size or TPM values

read_metrics

Dataframe with mapping statistics produced by python pipeline

GO_terms

DataFrame with gene ontology term IDs, that will be used in feature extraction

extra_genes

Additional genes used for feature extraction

organism

The target organism to generate the features for

Value

Returns the entire set of features in a data.frame