cellity (version 1.0.2)

plot_pca: Plots PCA of all features. Colors high and low quality cells based on outlier detection.

Description

Plots PCA of all features. Colors high and low quality cells based on outlier detection.

Usage

plot_pca(features, annot, pca, col, output_file)

Arguments

features

Input dataset containing features (cell x features)

annot

Matrix annotation of each cell

pca

PCA of features

col

color code indicating what color high and what low quality cells

output_file

where plot is stored

Value

Plots of PCA

Details

This function plots PCA of all features + most informative features