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cgdsr (version 1.2.5)

R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)

Description

Provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

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Version

Install

install.packages('cgdsr')

Monthly Downloads

26

Version

1.2.5

License

LGPL-3

Issues

6

Pull Requests

0

Stars

25

Forks

18

Maintainer

Augustin Luna

Last Published

August 27th, 2015

Functions in cgdsr (1.2.5)

cgdsr-getCaseLists

Get available case lists for a specific cancer study
cgdsr-getGeneticProfiles

Get available genetic data profiles for a specific cancer study
cgdsr-plot

Generic plot function for CGDS API data.
cgdsr-test

Simple test suite for CGDS object.
cgdsr-CGDS

Construct a CGDS connection object
cgdsr-package

CGDS-R : a library for accessing data in the MSKCC Cancer Genomics Data Server (CGDS).
cgdsr-getCancerStudies

Get available cancer studies available in CGDS
cgdsr-setPlotErrorMsg

Set custom plot error message
cgdsr-processURL

Internal methods for CGDS library.
cgdsr-getClinicalData

Get clinical data for cancer study
cgdsr-setVerbose

Set verbose logging level for CGDS function calls
cgdsr-getProfileData

Retrieves genomic profile data for genes and genetic profiles.
cgdsr-getMutationData

Get mutation data for cancer study