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cherry (version 0.6-11)

Multiple Testing Methods for Exploratory Research

Description

Provides an alternative approach to multiple testing by calculating a simultaneous upper confidence bounds for the number of true null hypotheses among any subset of the hypotheses of interest. Some of the functions in this package are optionally enhanced by the 'gurobi' software and its accompanying R package. For their installation, please follow the instructions at www.gurobi.com and http://www.gurobi.com/documentation, respectively.

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Version

Install

install.packages('cherry')

Monthly Downloads

517

Version

0.6-11

License

GPL (>= 2)

Maintainer

Jelle Goeman

Last Published

June 22nd, 2015

Functions in cherry (0.6-11)

NAEP

National Assessment of Educational Progress (NAEP) p-values
Select with shortcuts

Confidence limits for the number of true hypotheses, with shortcuts.
hommelFast

Calculates adjusted p-values of Hommel's method efficiently.
Adjusted

Adjusted p-values for the number of true hypotheses.
DAG Testing

Testing of hypotheses, forming a DAG.
Region Testing

Testing of all possible region hypotheses
Region class

Class "region" for storing the result of the region procedure
Pick

Confidence limits for the number of true hypotheses.
regionpick

Confidence limits for the number of false hypotheses in a given region.
structured Holm

Testing of hypotheses, forming a DAG, by using a variant of Holm's method.
Plot region objects

Visualizing of the region hypotheses that could be rejected.
DAGstructure class

Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
Closed Testing

Closed Testing for Exploratory Research
DAGpick

Confidence limits for the number of false hypotheses in a given family of sets.
Construct the DAG from a given collection of sets.

Constructing a DAG.
hommel class

Class "hommel" for storing the adjusted p-values of Hommel's multiple testing method.
Closure class

Class "closure" for storing the result of the closed testing procedure
DAG class

Class "DAG" for storing the result of the DAG multiple testing method