check.model.numerical.fit

<p>Data table of interaction data on which model is to be fit</p>

interaction.data

<p>Check if chicane model can be fit on a given dataset. 
<code>glm.nb</code> does not work when all responses are constant, or there are only two unique values and a covariate is a perfect predictor.</p>

Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.

Syed Haider

chicane

Capture Hi-C Analysis Engine

Erle Holgersen

Olivia Leavy

Olivia Fletcher

Frank Dudbridge

check.model.numerical.fit function

check.model.identifiability — check.model.numerical.fit

check.model.identifiability

check.model.numerical.fit: check.model.identifiability

Description

Usage

Arguments

Value