get.interaction.id

id of bait in format chr:start-end

bait

id of other end in format chr:start-end

other.end

logical indicating whether both ends are baits

bait.to.bait

logical indicating if IDs are zero-based

zero.based

Generate a unique identifying ID for each interaction

Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.

get.interaction.id: get.interaction.id

Description

Usage

Arguments

Value