stratified.enrichment.sample

Data table containing non-significant interactions that should be sampled from

nonsignificant.results

Data table of significant results. Used to determine size of strata in stratified sampling procedure.

significant.results

Generate a stratified sample matching distance distribution of significant interactions.

Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.

Syed Haider

stratified.enrichment.sample: stratified.enrichment.sample

Description

Usage

Arguments