gamma_estimation

A Filebacked Big Matrix \(n \times N\).

size

Kernel function type. Available types are c("Gaussian", "Laplacian").

kernel_type

Kernel parameter estimation by averaging the distances to the closest neighbors.

Routines for efficient cluster analysis of large scale data. This package implements the 'CHICKN'
clustering algorithm (see 'Permiakova' 'et' 'al.' (2020) "'CHICKN': Extraction of 'peptide' 'chromatographic'
'elution' profiles from large scale mass 'spectrometry' data by means of 'Wasserstein' 'compressive' hierarchical
cluster analysis"). Functions for data compression, hierarchical clustering and post processing are provided.

Olga Permiakova

gamma_estimation: Kernel parameter estimation

Description

Usage

Arguments

Value