defuseTPTN

The function uses the file defuse_TP_FP.txt located in the examples folder of chimera to 
generate a list of fSet object encompassing 60 TP fusions and 61 TN fusions extracted from supplementary table 8
of the deFuse paper McPherson et al. (2011) PLoS Comput Biol 7(5): e1001138.
The fset object can be used to evaluate the efficacy of filtering approaches available in chimera package. 


utilities

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders:  chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Raffaele A Calogero

chimera

A package for secondary analysis of fusion products

defuseTPTN function

The function uses the file defuse_TP_FP.txt located in the examples folder of chimera to 
generate a list of fSet object encompassing 60 TP fusions and 61 TN fusions extracted from supplementary table 8
of the deFuse paper McPherson et al. (2011) PLoS Comput Biol 7(5): e1001138.
The fset object can be used to evaluate the efficacy of filtering approaches available in chimera package.

defuseTPTN: A function that genererate a list of fSet objects encopassing 60 experimentally validated fusions and 61 false fusions

Description

Usage

Arguments

Value

Examples