gapfillerInstallation

A function allowing the download and installation of a compiled version of GapFiller in chimera package folder.
The source code of GapFiller can be retrieved at http://sourceforge.net/projects/gapfiller/files/?source=navbar .
The paper describing the tool is Nadalin F, Vezzi F, Policriti A. GapFiller: a de novo assembly approach to fill the gap within paired reads. BMC Bioinformatics. 2012;13 Suppl 14:S8.  


utilities

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders:  chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Raffaele A Calogero

chimera

A package for secondary analysis of fusion products

gapfillerInstallation function

A function allowing the download and installation of a compiled version of GapFiller in chimera package folder.
The source code of GapFiller can be retrieved at http://sourceforge.net/projects/gapfiller/files/?source=navbar .
The paper describing the tool is Nadalin F, Vezzi F, Policriti A. GapFiller: a de novo assembly approach to fill the gap within paired reads. BMC Bioinformatics. 2012;13 Suppl 14:S8.

gapfillerInstallation: A function to download a compiled version of GapFiller

Description

Usage

Arguments

See Also

Examples