chimera (version 1.14.0)

removingErrorLine: A function to remove a line stopping SAM to BAM conversion

Description

A function to remove a line stopping SAM to BAM conversion

Usage

removingErrorLine(line.number, filenameIn, filenameOut)

Arguments

line.number

line number to be removed

filenameIn

input file name

filenameOut

output file name

Value

SAM file without the error line

Examples

#removingErrorLine(14680066,"kd2_accepted_hits.sam","kd2_accepted_hits1.sam")