chimera (version 1.14.0)

starReads: A function to extract reads info from STAR fusion output

Description

A function producing a GRangeList for the reads information, involved in a fusion event.

Usage

starReads(fusion.report, parallel=FALSE)

Arguments

fusion.report

STAR fusion output file

parallel

option to run a parallel version of the function, default FALSE

Examples

#tmp <- starReads("Chimeric.out.junction", parallel=FALSE)