tophatInstallation

binDir

A function allowing the download and installation of tophat, bowtie and samtools in chimera package folder. The function also creates soft links in the user bin folder to allow the call of the above mentioned programs.            


utilities

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders:  chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Raffaele A Calogero

chimera

A package for secondary analysis of fusion products

tophatInstallation function

A function allowing the download and installation of tophat, bowtie and samtools in chimera package folder. The function also creates soft links in the user bin folder to allow the call of the above mentioned programs.

tophatInstallation: A function to download tophat, bowtie and samtools

Description

Usage

Arguments

Examples