chroGPS (version 1.16.0)

s2: Sample binding site and related data from S2 and BG3 cell lines in Drosophila melanogaster.

Description

chroGPS example dataset including ChIP-CHIP (modEncode) and ChIP-Seq (NCBI GEO GSE19325) data for Drosophila melanogaster S2 and BG3 cell lines as well as S2 wildtype gene expression values coming from Affymetrix Drosophila2 arrays. The object toydists stores precomputed distGPS objects (called d, d2, d3) for the epigenetic factors used in the dynamic vignette that comes with the package.

Usage

data(s2)

Source

http://www.modencode.org http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19325

References

http://www.modencode.org http://www.ncbi.nlm.nih.gov/geo/

Examples

data(s2)
class(s2)
s2
s2names$Factor
data(s2Seq)
s2Seq
# See vignette examples for several uses of these datasets.