configure_python_environment

Configures reticulate environment for parsers that have python dependencies.
Deprecated as this should no longer be necessary with reticulate <code>v1.41.0</code>.

internal

Reads chromatograms from binary formats into R objects. Currently supports
conversion of 'Agilent ChemStation', 'Agilent MassHunter', 'Shimadzu LabSolutions',
'ThermoRaw', and 'Varian Workstation' files as well as various text-based formats.
In addition to its internal parsers, chromConverter contains bindings to parsers in
external libraries, such as 'Aston' <https://github.com/bovee/aston>,
'Entab' <https://github.com/bovee/entab>, 'rainbow' <https://rainbow-api.readthedocs.io/>,
and 'ThermoRawFileParser' <https://github.com/compomics/ThermoRawFileParser>.

Ethan Bass

chromConverter

Chromatographic File Converter

James Dillon

Evan Shi

configure_python_environment function

<dl><dt>parser</dt>
<dd>Either <code>aston</code>, <code>rainbow</code>, or <code>olefile</code> (for
<code>read_shimadzu_lcd</code>).</dd>
<dt>return_boolean</dt>
<dd>Logical. Whether to return a Boolean value indicating
if the chromConverter environment is correctly configured.</dd></dl>

Arguments

Author

Configure python environment — configure_python_environment

<dl>

<dt>parser</dt>
<dd>Either <code>aston</code>, <code>rainbow</code>, or <code>olefile</code> (for
<code>read_shimadzu_lcd</code>).</dd>


<dt>return_boolean</dt>
<dd>Logical. Whether to return a Boolean value indicating
if the chromConverter environment is correctly configured.</dd>

</dl>

configure_python_environment: Configure python environment

Description

Usage

Value

Arguments

Author