read_waters_raw

Reads 'Waters MassLynx' (<code>.raw</code>) files into R.

Reads chromatograms from binary formats into R objects. Currently supports
conversion of 'Agilent ChemStation', 'Agilent MassHunter', 'Shimadzu LabSolutions',
'ThermoRaw', and 'Varian Workstation' files as well as various text-based formats.
In addition to its internal parsers, chromConverter contains bindings to parsers in
external libraries, such as 'Aston' <https://github.com/bovee/aston>,
'Entab' <https://github.com/bovee/entab>, 'rainbow' <https://rainbow-api.readthedocs.io/>,
and 'ThermoRawFileParser' <https://github.com/compomics/ThermoRawFileParser>.

Ethan Bass

chromConverter

Chromatographic File Converter

James Dillon

Evan Shi

read_waters_raw function

<dl><dt>path</dt>
<dd>Path to Waters <code>.raw</code> file.</dd>
<dt>format_out</dt>
<dd>Class of output. Either <code>matrix</code>, <code>data.frame</code>,
or <code>data.table</code>.</dd>
<dt>data_format</dt>
<dd>Either <code>wide</code> (default) or <code>long</code>.</dd>
<dt>read_metadata</dt>
<dd>Logical. Whether to attach metadata.</dd>
<dt>metadata_format</dt>
<dd>Format to output metadata. Either <code>chromconverter</code>
or <code>raw</code>.</dd></dl>

Arguments

Author

Read 'Waters' RAW — read_waters_raw

<dl>

<dt>path</dt>
<dd>Path to Waters <code>.raw</code> file.</dd>


<dt>format_out</dt>
<dd>Class of output. Either <code>matrix</code>, <code>data.frame</code>,
or <code>data.table</code>.</dd>


<dt>data_format</dt>
<dd>Either <code>wide</code> (default) or <code>long</code>.</dd>


<dt>read_metadata</dt>
<dd>Logical. Whether to attach metadata.</dd>


<dt>metadata_format</dt>
<dd>Format to output metadata. Either <code>chromconverter</code>
or <code>raw</code>.</dd>

</dl>

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read_waters_raw: Read 'Waters' RAW

Description

Usage

Value

Arguments

Author

See Also