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chromDraw (version 2.2.0)

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

Description

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

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Version

Version

2.2.0

License

GPL-3

Maintainer

Jan Janecka

Last Published

February 15th, 2017

Functions in chromDraw (2.2.0)

convertInputColors

The R function for converting the data frame with colors to chromDraw color data format.
convertInputData

The R function for converting Genomic Ranges data structure to the chromDraw dat format.
chromDraw-package

chromDraw - simple karyotype visualization tool.
chromDrawGR

Function chromDrawGR uses Genomic Ranges as input data format. This R function call the main C++ function.
main_chromDraw

The main chromDraw function, that controls all other C++ functions.
chromDraw

Main chromDraw function. This R function calls the main C++ function.