imr90.1:
A corrected CIM of replicate 1 of IMR90, for chromosomes 1 and 2
Description
A corrected chromosomal interaction map (CIM) for replicate 1 of IMR90, for
chromosomes 1 and 2, generated from a publicly available Hi-C data set [1].
This matrix was built with BuildCIM given Hi-C mapped positions
(publicly available from
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156) and then further
corrected with CorrectCIM.
Usage
data(imr90.1)
Arguments
Format
A matrix
References
[1] J. R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M.
Hu, J. S. Liu and B. Ren, Nature, 2012, 485, 376.
See also http://www.cl.cam.ac.uk/~ys388/chromoR/ for the genome wide CIM.