
A data table definding the genomic coordinates of each row/col in the corresponding CIMs (genome segmentation).


datasets

chromoR provides users with a statistical pipeline for analysing chromosomal interactions data (Hi-C data).It combines wavelet methods and a Bayesian approach for correction (bias and noise) and comparison (detecting significant changes between Hi-C maps) of Hi-C contact maps.In addition, it also support detection of change points in 1D Hi-C contact profiles.

Yoli Shavit

chromoR

Analysis of chromosomal interactions data (correction,
segmentation and comparison)

seg function

A data frame 3 variables: chr, start, end

seg: A segmentation for imr90.1 and imr90.2 CIMs

Description

Usage

Arguments

Format

Examples