Connectome_Workbench_Description
Connectome_Workbench
Add surface(s) to a "xifti"
object
Format surface data as a "gifti"
object
"ROY_BIG_BL" color palette
brainstructures
ROI_brainstructures_Param_LR
ROI_brainstructures
All Integers?
cifti_fname
Check CIFTI type
Format metric data as a "gifti"
object
Convert coordinate list to volume.
Assemble a "xifti"
object from data
brainstructures_Param_all
brainstructures
Get ciftiTools
option
Print Suppressable Warning
Set ciftiTools
option
Validate a "xifti"
object.
Print Suppressable Message
List ciftiTools
options
Get CIFTI file extension
Get CIFTI component suffix default
Merges two kwargs
Validate the "data" component of a "xifti"
object
original_fnames_Param_resampled
original_fnames: for resampling
Wrapper for Connectome Workbench Commands
rgl_static_plots_Description
Embedding the Static Plots
Interpolates between entries in the input palette to make a larger palette
with at least MIN_COLOR_RES entries.
Message on attach
Expect these CIFTIs to match
Crop a 3D array
get_data_meta_from_cifti_xml
Extract data-related metadata from CIFTI
Validate a surface (vertices + faces)
Get CIFTI metadata
Summarise cifti objects
Get example files
Get kwargs
get_intn_meta_from_cifti_xml
Extract intent-specific metadata from CIFTI
Validate a factor vector of subcortical labels
Get NIFTI header (of a CIFTI)
Validate a 3d binary mask
Validate a "xifti"
object
Validate a ciftiTools
option and value
Make a color palette.
File name check
labels
S3 method: plot surface
S3 method: use view_xifti
to plot a "xifti"
object
Validate a numeric matrix
Fix GIFTI medial wall
Flatten a "xifti"
object
Validate the "meta"
component of a "xifti"
object
Read only the data matrix in a CIFTI file
Pad a 3D Array
resamp_fnames
Format a path
surfR_original_fname_Param
surfR_original_fname
surfR_fname
Summarise cifti objects
Use a color palette
Separate a CIFTI file
Parcellation borders
Read a CIFTI file with optional resampling
Make "xifti"
cortical components
verbose: FALSE
Do these character vectors match exactly?
View subcortex
view_xifti_surface.surf_hemi
Sort out surface & hemispehre args for view_xifti_surface
Make a template "xifti"
object
separate_cifti
wrapper
Format a path for system
. Read a CIFTI file
resamp_keep
Match user inputs to expected values
Read a CIFTI file quickly
resample_cifti_default_fname
Get resampled file name default
View a "xifti"
object
View cortical surface
Write a CIFTI file from a "xifti"
object.
Remove "xifti"
component
Resample a "surf"
object
read_dir: separated files
Write CIFTI component files from a "xifti"
object.
get_misc_meta_from_cifti_xml
Extract misc metadata from CIFTI
Get the Connectome Workbench command path
Convert input to a "surf"
object
xifti
Generate GIFTI sphere surface files
Make "xifti"
subcortical components
Make the subcortical transformation matrix
resamp_res_Param_optional
resamp_res: optional
Assemble a "xifti"
object
Write subcortical data to NIFTI files
resample_cifti_from_template
Resample a CIFTI from a template
resamp_res_Param_required
resamp_res: required
Get XML of a CIFTI
write_dir_Param_intermediate
write_dir: intermediate separated/resampled files
surfL_target_fname
surfR
rgl_interactive_plots_Description
Navigating and Embedding the Interactive Plots
Write CIFTI cortex data to GIFTI
Resample a GIFTI file (with its ROI)
resample_cifti
wrapper
sep_fnames
sep_keep
surfR_target_fname
resample_cifti_components
Resample a series of GIFTIs related to a CIFTI file
Resample CIFTI Data
surface plot
Undo a volumetric mask
Unmask cortex
view_xifti_surface.mesh_val
Get the mesh(es) and data values for view_xifti_surface
Smooth a CIFTI
Substructure table
write_dir: generic
view_xifti_surface.draw_title
Draw title in RGL
write_cifti_from_separate
Make CIFTI file
The NIFTI intents supported by ciftiTools
surfL
surfL_fname
Make the colorbar for view_xifti_surface
surfL_original_fname_Param
surfL_original_fname
wb_path
Draw color legend for qualitative mode
Request "wb_path"
verbose: TRUE
view_xifti_surface.draw_mesh
Draw brain hemisphere mesh in RGL
View "surf"
object(s)
Get the palettes and data color mapping for view_xifti_surface
x: xifti
Write CIFTI surface data to GIFTI