resample_cifti_components

The original resolution(s) of the CIFTI cortical surface(s).

original_res

Target resolution for resampling (number of
cortical surface vertices per hemisphere).

resamp_res

(Optional) File path of
GIFTI data for [left/right] cortex to resample.

cortexL_original_fname, cortexR_original_fname

(Optional) File path to
save the resampled GIFTI data for [left/right] cortex as.
If NULL (default) and <code>cortex[L/R]_original_fname</code> was provided, it
will be named by <code><a rd-options="" href="/link/cifti_component_suffix?package=ciftiTools&version=0.9.0" data-mini-rdoc="ciftiTools::cifti_component_suffix">cifti_component_suffix</a></code>.

cortexL_target_fname, cortexR_target_fname

(Optional) File
path of GIFTI ROI corresponding to <code>cortex[L/R]_original_fname</code> to
resample.

ROIcortexL_original_fname, ROIcortexR_original_fname

(Optional) File path
of to save the resampled GIFTI ROI corresponding to
<code>cortex[L/R]_target_fname</code> as.
If NULL (default) and <code>cortex[L/R]_original_fname</code> was provided, it
will be named by <code><a rd-options="" href="/link/cifti_component_suffix?package=ciftiTools&version=0.9.0" data-mini-rdoc="ciftiTools::cifti_component_suffix">cifti_component_suffix</a></code>.

ROIcortexL_target_fname, ROIcortexR_target_fname

(Optional) File path to a GIFTI surface geometry
file representing the left cortex.

surfL_original_fname

(Optional) File path to a GIFTI surface geometry
file representing the right cortex.

surfR_original_fname

(Optional) Where to save the resampled GIFTI
surface geometry file representing the left cortex.

surfL_target_fname

(Optional) Where to save the resampled GIFTI
surface geometry file representing the right cortex.

surfR_target_fname

Directory to append to the path of every file being read,
e.g. <code>cortexL_original_fname</code>. If <code>NULL</code> (default), do not append
any directory to the path.<code>read_dir</code> must already exist, or an error will be raised.

read_dir

Where should the separated files be placed? <code>NULL</code>
(default) will write them to the current working directory.<code>write_dir</code> must already exist, or an error will occur.

write_dir

Performs spatial resampling of various CIFTI file components on
the cortical surface. (The subcortical data is not resampled here.)
GIFTI surface geometry files can additionally be included: see
<code>surfL_original_fname</code> and <code>surfR_original_fname</code>.

internal

CIFTI files contain brain imaging data in "grayordinates," which
represent the gray matter as cortical surface vertices (left and right) and
subcortical voxels (cerebellum, basal ganglia, and other deep gray matter).
'ciftiTools' provides a unified environment for reading, writing,
visualizing and manipulating CIFTI-format data. It supports the "dscalar,"
"dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti"
object, which is structured for convenient access to the data and metadata,
and includes support for surface geometry files to enable
spatially-dependent functionality such as static or interactive
visualizations and smoothing.

Amanda Mejia

ciftiTools

Tools for Reading, Writing, Viewing and Manipulating CIFTI Files

Damon Pham

John Muschelli

resample_cifti_components function

(Optional) File path to
save the resampled GIFTI data for [left/right] cortex as.
If NULL (default) and <code>cortex[L/R]_original_fname</code> was provided, it
will be named by <code><a rd-options='' href='cifti_component_suffix'>cifti_component_suffix</a></code>.

(Optional) File path
of to save the resampled GIFTI ROI corresponding to
<code>cortex[L/R]_target_fname</code> as.
If NULL (default) and <code>cortex[L/R]_original_fname</code> was provided, it
will be named by <code><a rd-options='' href='cifti_component_suffix'>cifti_component_suffix</a></code>.

Directory to append to the path of every file being read,
e.g. <code>cortexL_original_fname</code>. If <code>NULL</code> (default), do not append
any directory to the path.

<code>read_dir</code> must already exist, or an error will be raised.

Where should the separated files be placed? <code>NULL</code>
(default) will write them to the current working directory.

<code>write_dir</code> must already exist, or an error will occur.

resample_cifti_components: Resample a series of GIFTIs related to a CIFTI file

Description

Usage

Arguments

Value

Details