Plot Chord Diagram from an adjacency matrix
Convert adjacency list to an adjacency matrix
Arrange links evenly on each sector
Easy way to get meta data in the current cell
Add transparency to colors
Draw x-axis
Plot Chord Diagram
Draw arrow which is paralle to the circle
Add circular dendrograms
Convert adjacency matrix to an adjacency list
Easy to way to get meta data in the current cell
chordDiagramFromDataFrame
Plot Chord Diagram from a data frame
Add genomic axes
Reset the circular layout parameters
Draw barplots
Add points to a plotting region, specifically for genomic graphics
Add links from two sets of genomic positions
Calculate and add genomic density track
Circular visualization in R
Draw connecting lines/ribons between two sets of points
Draw boxplots
Add labels to specified genomic regions
Draw rectangle-like grid, specifically for genomic graphics
Draw text in a cell, specifically for genomic graphics
Add an ideogram track
Initialize circular plot with any genomic data
Add lines to a plotting region, specifically for genomic graphics
Initialize the circular layout
circos.genomicPosTransformLines
Add genomic position transformation lines between tracks
Create a track for genomic graphics
Convert to polar coordinate system
Genomic rainfall plot
circos.genomicTrackPlotRegion
Create a track for genomic graphics
circos.initializeCircularGenome
Initialize a layout for circular genome
Add points to a plotting region
Draw polygon
Nested zooming with two circular plots
Draw a link between two matrix rows in the circular heatmap
Draw text in a cell
Make circular heatmaps
Add a label track
Get information of the circular plot
Draw links between points or/and intervals
Add lines to the plotting region
Draw x-axis
circos.heatmap.initialize
Initialize circular heatmaps
Draw triangles
circos.initializeWithIdeogram
Initialize the circular layout with an ideogram
Color interpolation
Add points to the plotting regions in a same track
Parameters for the circular layout
Draw segments through pairwise of points
Draw y-axis
Add heatmaps for selected regions
Convert units
Highlight sectors and tracks
Convert unit on x direction in data coordinate
Convert units
Calculate genomic region density
Add raster images
Draw rectangle-like grid
Convert unit on x direction in data coordinate
Convert units
Draw text in cells among the whole track
Set flag to current cell
Convert unit on x direction in data coordinate
Get index for all sectors
Get current chromosome name
Create plotting regions for a whole track
Convert units
Draw violin plots
Add lines to the plotting regions in a same track
Update the plotting region in an existed cell
Create plotting regions for a whole track
Draw histogram in cells among a whole track
Get current sector index
Transform back from colors to values
Genomic position transformation function specifically for text
Convert unit on y direction in data coordinate
Convert unit on y direction in data coordinate
Get the inside radius of the most inner track
Convert unit on y direction in data coordinate
Calculate inter-distance of genomic regions
Convert units
Convert fontsize to cex
Convert unit on x direction in data coordinate
Convert unit on y direction in data coordinate
Get index for all tracks
Get the meta data of a cell
Convert unit on x direction in data coordinate
Generate random genomic data
Generate random colors
Convert to data coordinate system
Mark the value as a degree value
Draw sectors or rings in a circle
Convert units
Assign colors to cytogenetic band (hg19) according to the Giemsa stain results
Print CELL_META
Convert unit on y direction in data coordinate
Names of all meta data in the current cell
Highlight chromosomes
Read/parse chromInfo data from a data frame/file/UCSC database
Genomic position transformation function
Read/parse cytoband data from a data frame/file/UCSC database
Create plotting regions for a whole track
Get current track index
Convert unit on x direction in data coordinate
Which data that panel.fun is using
Label the sector index and the track index on each cell
Convert unit on y direction in data coordinate
Adjust positions of text
Set gaps between tracks
Convert units
Calculate gaps to make two Chord diagrams in the same scale