Convert adjacency list to an adjacency matrix
Calculate gaps to make two Chord diagrams in the same scale
Add transparency to colors
Easy way to get meta data in the current cell
Circular visualization in R
Plot Chord Diagram
Plot Chord Diagram from an adjacency matrix
chordDiagramFromDataFrame
Plot Chord Diagram from a data frame
Convert adjacency matrix to an adjacency list
Easy to way to get meta data in the current cell
Add an ideogram track
Initialize circular plot with any genomic data
Add heatmaps for selected regions
Draw text in a cell, specifically for genomic graphics
Draw links between points or/and intervals
Calculate and add genomic density track
Draw rectangle-like grid, specifically for genomic graphics
Add lines to the plotting region
Create plotting regions for a whole track
Draw histogram in cells among a whole track
Reset the circular layout parameters
Draw boxplots
Add lines to the plotting regions in a same track
Draw barplots
Draw x-axis
Initialize the circular layout
circos.initializeWithIdeogram
Initialize the circular layout with an ideogram
Add points to a plotting region
Draw polygon
Convert to polar coordinate system
Draw arrow which is paralle to the circle
Draw a link between two matrix rows in the circular heatmap
Add points to a plotting region, specifically for genomic graphics
Add links from two sets of genomic positions
Get information of the circular plot
Add circular dendrograms
Make circular heatmaps
Update the plotting region in an existed cell
Draw segments through pairwise of points
Convert units
Draw x-axis
Draw y-axis
Draw text in a cell
Add genomic axes
Add lines to a plotting region, specifically for genomic graphics
Draw violin plots
Add labels to specified genomic regions
Create a track for genomic graphics
Convert unit on x direction in data coordinate
Create plotting regions for a whole track
circos.genomicPosTransformLines
Add genomic position transformation lines between tracks
Get index for all tracks
Get the meta data of a cell
Get current track index
Transform back from colors to values
Draw sectors or rings in a circle
Highlight chromosomes
Mark the value as a degree value
Convert unit on y direction in data coordinate
circos.heatmap.initialize
Initialize circular heatmaps
Draw triangles
Convert unit on x direction in data coordinate
Get current chromosome name
Convert units
circos.genomicTrackPlotRegion
Create a track for genomic graphics
Which data that panel.fun
is using
Get current sector index
Add raster images
Convert units
Draw rectangle-like grid
Genomic rainfall plot
Label the sector index and the track index on each cell
Convert unit on x direction in data coordinate
Adjust positions of text
Convert unit on x direction in data coordinate
Convert unit on y direction in data coordinate
Genomic position transformation function
Nested zooming with two circular plots
Names of all meta data in the current cell
Convert unit on y direction in data coordinate
Genomic position transformation function specifically for text
Get index for all sectors
Create plotting regions for a whole track
Assign colors to cytogenetic band (hg19) according to the Giemsa stain results
Calculate genomic region density
Convert unit on y direction in data coordinate
Highlight sectors and tracks
Convert to data coordinate system
Read/parse cytoband data from a data frame/file/UCSC database
Convert units
Convert unit on x direction in data coordinate
Print CELL_META
Calculate inter-distance of genomic regions
Convert unit on y direction in data coordinate
Set flag to current cell
Set gaps between tracks
Color interpolation
Draw text in cells among the whole track
Parameters for the circular layout
Add points to the plotting regions in a same track
Convert units
Generate random genomic data
Convert unit on y direction in data coordinate
Convert fontsize to cex
Generate random colors
Convert units
Read/parse chromInfo data from a data frame/file/UCSC database
Convert units
Convert unit on x direction in data coordinate