Add transparency to colors
Convert adjacency list to an adjacency matrix
Add circular dendrograms
Add an ideogram track
Add genomic axes
Convert adjacency matrix to an adjacency list
Circular visualization in R
Arrange links evenly on each sector
Calculate gaps to make two Chord diagrams in the same scale
Plot Chord Diagram
circos.genomicPosTransformLines
Add genomic position transformation lines between tracks
Draw connecting lines/ribons between two sets of points
Reset the circular layout parameters
Add links from two sets of genomic positions
Initialize the circular layout
Add points to a plotting region, specifically for genomic graphics
circos.initializeCircularGenome
Initialize a layout for circular genome
Convert units
Calculate genomic region density
Convert unit on x direction in data coordinate
Get index for all sectors
Genomic rainfall plot
Make circular heatmaps
Get current track index
Convert to polar coordinate system
chordDiagramFromDataFrame
Plot Chord Diagram from a data frame
Plot Chord Diagram from an adjacency matrix
Which data that panel.fun
is using
Convert unit on x direction in data coordinate
Convert to data coordinate system
Convert units
Set flag to current cell
circos.heatmap.initialize
Initialize circular heatmaps
circos.initializeWithIdeogram
Initialize the circular layout with an ideogram
Adjust positions of text
Initialize circular plot with any genomic data
Draw x-axis
Add lines to a plotting region, specifically for genomic graphics
Draw arrow which is paralle to the circle
Add labels to specified genomic regions
Add lines to the plotting region
Draw links between points or/and intervals
Draw text in cells among the whole track
Add points to the plotting regions in a same track
Convert units
Draw rectangle-like grid, specifically for genomic graphics
Color interpolation
Nested zooming with two circular plots
Parameters for the circular layout
Draw text in a cell, specifically for genomic graphics
Create plotting regions for a whole track
Draw violin plots
Update the plotting region in an existed cell
Draw triangles
Convert fontsize to cex
Draw a link between two matrix rows in the circular heatmap
Add a label track
Generate random genomic data
Mark the value as a degree value
Convert units
Get current chromosome name
Get current sector index
Add points to a plotting region
Draw segments through pairwise of points
Get information of the circular plot
Draw polygon
Draw sectors or rings in a circle
Convert unit on x direction in data coordinate
Easy way to get meta data in the current cell
Draw text in a cell
Convert unit on y direction in data coordinate
Convert unit on y direction in data coordinate
Convert units
Easy to way to get meta data in the current cell
Draw barplots
Calculate and add genomic density track
Draw boxplots
Add heatmaps for selected regions
Add lines to the plotting regions in a same track
Read/parse chromInfo data from a data frame/file/UCSC database
Genomic position transformation function specifically for text
Print CELL_META
Read/parse cytoband data from a data frame/file/UCSC database
circos.genomicTrackPlotRegion
Create a track for genomic graphics
Create a track for genomic graphics
Create plotting regions for a whole track
Draw rectangle-like grid
Add raster images
Draw y-axis
Create plotting regions for a whole track
Draw x-axis
Convert unit on y direction in data coordinate
Draw histogram in cells among a whole track
Convert unit on y direction in data coordinate
Convert units
Convert unit on x direction in data coordinate
Highlight chromosomes
Set gaps between tracks
Get the inside radius of the most inner track
Label the sector index and the track index on each cell
Transform back from colors to values
Get index for all tracks
Assign colors to cytogenetic band (hg19) according to the Giemsa stain results
Get the meta data of a cell
Convert unit on x direction in data coordinate
Convert unit on y direction in data coordinate
Highlight sectors and tracks
Convert units
Names of all meta data in the current cell
Calculate inter-distance of genomic regions
Genomic position transformation function
Generate random colors
Convert unit on y direction in data coordinate
Convert unit on x direction in data coordinate