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clValid (version 0.6-4)

Validation of Clustering Results

Description

Statistical and biological validation of clustering results.

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Version

Install

install.packages('clValid')

Monthly Downloads

2,640

Version

0.6-4

License

LGPL-3

Maintainer

Guy Brock

Last Published

October 18th, 2011

Functions in clValid (0.6-4)

sota

Self-organizing Tree Algorithm (SOTA)
mouse

Mouse Mesenchymal Cells
BHI

Biological Homogeneity Index
stability

Stability Measures
clValid

Validate Cluster Results
annotationListToMatrix

Change annotation list to matrix
getRanksWeights

Extract ranks and weights from clValid object
dunn

Dunn Index
BSI

Biological Stability Index
print.sota

Print Function for a SOTA Object
plot.sota

Plot Function for a SOTA Object
connectivity

Connectivity Measure
clValid-class

Class "clValid"
readAnnotationFile

Read in biological annotation files from external file
clValid-internal

Internal clValid functions