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clValid (version 0.6-9)

Validation of Clustering Results

Description

Statistical and biological validation of clustering results. This package implements Dunn Index, Silhouette, Connectivity, Stability, BHI and BSI. Further information can be found in Brock, G et al. (2008) .

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Version

Install

install.packages('clValid')

Monthly Downloads

1,669

Version

0.6-9

License

LGPL-3

Maintainer

Vasyl Pihur

Last Published

July 14th, 2020

Functions in clValid (0.6-9)

BHI

Biological Homogeneity Index
mouse

Mouse Mesenchymal Cells
BSI

Biological Stability Index
clValid

Validate Cluster Results
connectivity

Connectivity Measure
dunn

Dunn Index
clValid-internal

Internal clValid functions
annotationListToMatrix

Change annotation list to matrix
sota

Self-organizing Tree Algorithm (SOTA)
getRanksWeights

Extract ranks and weights from clValid object
readAnnotationFile

Read in biological annotation files from external file
stability

Stability Measures
clValid-class

Class "clValid"
print.sota

Print Function for a SOTA Object
plot.sota

Plot Function for a SOTA Object