featureVector-class

featureVector

$,featureVector-method

$<-,featureVector-method


  An object of class <code>"featureVector"</code> represents the output of <code><a rd-options="" href="/link/buildFeatureVector?package=cleanUpdTSeq&version=1.10.2" data-mini-rdoc="cleanUpdTSeq::buildFeatureVector">buildFeatureVector</a></code>


classes

This package uses the Naive Bayes classifier (from e1071)
to assign probability values to putative polyadenylation sites
(pA sites) based on training data from zebrafish. This will
allow the user to separate true, biologically relevant pA sites
from false, oligodT primed pA sites.

Sarah Sheppard

cleanUpdTSeq

This package classifies putative polyadenylation sites as true
or false/internally oligodT primed

featureVector-class function

Objects can be created by calls of the form <code>new("featureVector", data, info)</code>.

Objects from the Class

<dl>
    <dt><code>data</code></dt><dd>
      An object of data frame. Fields include peak name, upstream sequence, downstream sequence, and features to be used in classifying the putative polyadenylation site
    </dd> <dt>info</dt><dd> Object of class <code><a rd-options="" href="/link/modelInfo?package=cleanUpdTSeq&version=1.10.2" data-mini-rdoc="cleanUpdTSeq::modelInfo">modelInfo</a></code></dd> </dl> 

Slots

<dl>
        <dt>$, $&lt;-</dt><dd>Get or set the slot of <code><a rd-options="" href="/link/featureVector?package=cleanUpdTSeq&version=1.10.2" data-mini-rdoc="cleanUpdTSeq::featureVector">featureVector</a></code></dd> </dl> 

Methods

An object of class <code>"featureVector"</code> represents the output of <code><a href="buildFeatureVector" rd-options="">buildFeatureVector</a></code>

featureVector-class: Class `"featureVector"`

Description

Arguments

Objects from the Class

Slots

Methods