mh_plot_af_monthly

Plot attributable fractions grouped over the whole time series by
calendar month to explore seasonality.

internal

Tools for producing climate-health indicators and supporting
official statistics from health and climate data. Implements analytical
workflows for temperature-related mortality, wildfire smoke exposure,
air pollution, suicides related to extreme heat, malaria, and
diarrhoeal disease outcomes, with utilities for descriptive statistics, model
validation, attributable fraction and attributable number estimation,
relative risk estimation, minimum mortality temperature estimation,
and plotting for reporting. These six indicators are endorsed by
the United Nations Statistical Commission for inclusion in the
Global Set of Environment and Climate Change Statistics.
Implemented methods include distributed lag non-linear models (DLNM),
quasi-Poisson time-series regression, case-crossover analysis,
Bayesian spatio-temporal models using the Integrated Nested Laplace
Approximation ('INLA'), and multivariate meta-analysis for
sub-national estimates. The package is based on methods developed
in the Standards for Official Statistics on Climate-Health
Interactions (SOSCHI) project
<https://climate-health.officialstatistics.org>. For methodologies,
see Watkins et al. (2025) <doi:10.5281/zenodo.14865904>,
Brown et al. (2024) <doi:10.5281/zenodo.14052183>,
Pearce et al. (2024) <doi:10.5281/zenodo.14050224>,
Byukusenge et al. (2025) <doi:10.5281/zenodo.15585042>,
Dzakpa et al. (2025) <doi:10.5281/zenodo.14881886>, and
Dzakpa et al. (2025) <doi:10.5281/zenodo.14871506>.

Kenechi Omeke

climatehealth

Statistical Tools for Modelling Climate-Health Impacts

Charlie Browning

Etse Yawo Dzakpa

Gladin Jose

Matt Pearce

Ellie Watkins

Claire Hunt

Beatrice Byukusenge

Cassien Habyarimana

Venuste Nyagahakwa

Felix Scarbrough

Treesa Shaji

Bonnie Lewis

Maquines Odhiambo Sewe

Vijendra Ingole

Sean Lovell

Antony Brown

Euan Soutter

Gillian Flower

David Furley

Joe Panes

Charlotte Romaniuk

Milly Powell

Wellcome 

Office for National Statistics 

mh_plot_af_monthly function

<dl><dt>attr_mth_list</dt>
<dd>A list of data frames containing total attributable
fractions, numbers and rates by calendar month and area.</dd>
<dt>df_list</dt>
<dd>A list of dataframes containing daily timeseries data for a
health outcome and climate variables which may be disaggregated by a
particular region.</dd>
<dt>country</dt>
<dd>Character. Name of country for national level estimates.
Defaults to 'National'.</dd>
<dt>attr_thr</dt>
<dd>Integer. Percentile at which to define the temperature
threshold for calculating attributable risk. Defaults to 97.5.</dd>
<dt>save_fig</dt>
<dd>Boolean. Whether to save the plot as an output. Defaults to
FALSE.</dd>
<dt>output_folder_path</dt>
<dd>Path to folder where plots should be saved.
Defaults to NULL.</dd></dl>

Arguments

Plot attributable fractions by calendar month — mh_plot_af_monthly

<dl>

<dt>attr_mth_list</dt>
<dd>A list of data frames containing total attributable
fractions, numbers and rates by calendar month and area.</dd>


<dt>df_list</dt>
<dd>A list of dataframes containing daily timeseries data for a
health outcome and climate variables which may be disaggregated by a
particular region.</dd>


<dt>country</dt>
<dd>Character. Name of country for national level estimates.
Defaults to 'National'.</dd>


<dt>attr_thr</dt>
<dd>Integer. Percentile at which to define the temperature
threshold for calculating attributable risk. Defaults to 97.5.</dd>


<dt>save_fig</dt>
<dd>Boolean. Whether to save the plot as an output. Defaults to
FALSE.</dd>


<dt>output_folder_path</dt>
<dd>Path to folder where plots should be saved.
Defaults to NULL.</dd>

</dl>

Plot attributable fractions by calendar month

mh_plot_af_monthly: Plot attributable fractions by calendar month

Description

Usage

Value

Arguments