getExtraDirs

By default, the 'figures', 'tables' and patient profiles folders 
(<code>patientProfilePath</code> parameter in the general
config file, if specified) in the input directory are considered.

Creation of interactive tables, listings and figures ('TLFs')
and associated report for exploratory analysis of data in a clinical trial,
e.g. for clinical oversight activities.
Interactive figures include sunburst, treemap, scatterplot, line plot and
barplot of counts data.
Interactive tables include table of summary statistics
(as counts of adverse events, enrollment table) and listings.
Possibility to compare data (summary table or listing) across two data batches/sets.
A clinical data review report is created via study-specific configuration
files and template 'R Markdown' reports contained in the package.

Laure Cougnaud

clinDataReview

Clinical Data Review Tool

Michela Pasetto

Lennart Tuijnder

Adriaan Blommaert

Arne De Roeck

Open Analytics 

getExtraDirs function

<dl><dt>inputDir</dt>
<dd>String with input directory,
working directory by default.</dd>
<dt>configDir</dt>
<dd>String with directory with config files,
by default a 'config' folder in <code>inputDir</code>. 
It should contain a general 'config.yml' file and dedicated
'config-[X].yml' for each chapter.
The order of each chapter is specified in the 'config' slot in the general 
general 'config.yml'.</dd></dl>

Arguments

Author

Get extra directory(ies) required for the clinical data review report — getExtraDirs

<dl>

<dt>inputDir</dt>
<dd>String with input directory,
working directory by default.</dd>


<dt>configDir</dt>
<dd>String with directory with config files,
by default a 'config' folder in <code>inputDir</code>. 
It should contain a general 'config.yml' file and dedicated
'config-[X].yml' for each chapter.
The order of each chapter is specified in the 'config' slot in the general 
general 'config.yml'.</dd>

</dl>

getExtraDirs: Get extra directory(ies) required for the clinical data review report

Description

Usage

Value

Arguments

Author