renderFile

This has the possibility to save output in a log file,
and saving also session information.

Creation of interactive tables, listings and figures ('TLFs')
and associated report for exploratory analysis of data in a clinical trial,
e.g. for clinical oversight activities.
Interactive figures include sunburst, treemap, scatterplot, line plot and
barplot of counts data.
Interactive tables include table of summary statistics
(as counts of adverse events, enrollment table) and listings.
Possibility to compare data (summary table or listing) across two data batches/sets.
A clinical data review report is created via study-specific configuration
files and template 'R Markdown' reports contained in the package.

Laure Cougnaud

clinDataReview

Clinical Data Review Tool

Michela Pasetto

Lennart Tuijnder

Adriaan Blommaert

Arne De Roeck

Open Analytics 

renderFile function

<dl><dt>input</dt>
<dd>Input file to be rendered.</dd>
<dt>encoding</dt>
<dd>String with encoding, 'UTF-8' by default.</dd>
<dt>params</dt>
<dd>List with input parameters for this document. 
These parameters should be accessed in the Rmd document via
<code>params$...</code>. 
These parameters will be saved to a RDS file and imported 
during the report rendering.</dd>
<dt>logFile</dt>
<dd>(optional) String with path to a log file,
where output (also error/messages/warnings) should be stored.
If specified, the entire output is re-directed to this file.</dd>
<dt>...</dt>
<dd>Any extra parameters passed to <code><a href="https://pkgs.rstudio.com/rmarkdown/reference/render.html">render</a></code>,
for expert use only.</dd></dl>

Arguments

Author

Render a rmarkdown file, possibly in a new R session — renderFile

<dl>

<dt>input</dt>
<dd>Input file to be rendered.</dd>


<dt>encoding</dt>
<dd>String with encoding, 'UTF-8' by default.</dd>


<dt>params</dt>
<dd>List with input parameters for this document. 
These parameters should be accessed in the Rmd document via
<code>params$...</code>. 
These parameters will be saved to a RDS file and imported 
during the report rendering.</dd>


<dt>logFile</dt>
<dd>(optional) String with path to a log file,
where output (also error/messages/warnings) should be stored.
If specified, the entire output is re-directed to this file.</dd>


<dt>...</dt>
<dd>Any extra parameters passed to <code><a href='https://pkgs.rstudio.com/rmarkdown/reference/render.html'>render</a></code>,
for expert use only.</dd>

</dl>

renderFile: Render a rmarkdown file, possibly in a new R session

Description

Usage

Value

Arguments

Author

Details