dataset_cui2vec_definitions

This dataset contains definitions for the Unified Medical Language System
(UMLS) Concept Unique Identifiers (CUIs). These come from Andrew Beam's
<a href="https://github.com/beamandrew/cui2vec">cui2vec R package</a>.

Performs biomedical named entity recognition,
Unified Medical Language System (UMLS) concept mapping, and negation
detection using the Python 'spaCy', 'scispaCy', and 'medspaCy' packages, and
transforms extracted data into a wide format for inclusion in machine
learning models. The development of the 'scispaCy' package is described by
Neumann (2019) <doi:10.18653/v1/W19-5034>. The 'medspacy' package uses
'ConText', an algorithm for determining the context of clinical statements
described by Harkema (2009) <doi:10.1016/j.jbi.2009.05.002>. Clinspacy
also supports entity embeddings from 'scispaCy' and UMLS 'cui2vec' concept
embeddings developed by Beam (2018) <arXiv:1804.01486>.

Karandeep Singh

clinspacy

Clinical Natural Language Processing using 'spaCy', 'scispaCy',
and 'medspaCy'

dataset_cui2vec_definitions function

A data frame with 3053795 rows and 3 variables:<dl class="dl-horizontal">
 <dt>cui</dt><dd>A Unified Medical Language System (UMLS) Concept Unique
 Identifier (CUI)</dd> <dt>semantic_type</dt><dd>Semantic type of the CUI</dd>
 <dt>definition</dt><dd>Definition of the CUI</dd> </dl>

Format

This dataset contains definitions for the Unified Medical Language System
(UMLS) Concept Unique Identifiers (CUIs). These come from Andrew Beam's
<a href='https://github.com/beamandrew/cui2vec'>cui2vec R package</a>.

Cui2vec concept definitions — dataset_cui2vec_definitions

A data frame with 3053795 rows and 3 variables:<dl class='dl-horizontal'>
 <dt>cui</dt><dd>A Unified Medical Language System (UMLS) Concept Unique
 Identifier (CUI)</dd> <dt>semantic_type</dt><dd>Semantic type of the CUI</dd>
 <dt>definition</dt><dd>Definition of the CUI</dd> </dl>

dataset_cui2vec_definitions: Cui2vec concept definitions

Description

Usage

Arguments

Value

Format

Details