getJunctionTreePaths

Extract the shortest paths along the junction tree of the graph.

Find the shortest paths in the Junction tree designed with the cliques of the graph.

Usage

getJunctionTreePaths(graph, root=NULL)

References

Martini P, Sales G, Massa MS, Chiogna M, Romualdi C. Along signal paths: an empirical gene set approach exploiting pathway topology. NAR. 2012 Sep.

Massa MS, Chiogna M, Romualdi C. Gene set analysis exploiting the topology of a pathway. BMC System Biol. 2010 Sep 1;4:121.

Aliases

• getJunctionTreePaths

Examples

if (require(graphite)) {
  kegg  <- pathways("hsapiens", "kegg")
  graph <- pathwayGraph(convertIdentifiers(kegg$'Chronic myeloid leukemia', "entrez"))
  getJunctionTreePaths(graph)
}