cliqueMS (version 0.3.1)

createanClique.XCMSnExp: 'createanClique.XCMSnExp' produces an object of class 'anClique'.

Description

anClique creates an 'anClique' object from 'XCMSnExp' processed m/z data.

Usage

# S3 method for XCMSnExp
createanClique(mzData)

Arguments

mzData

A 'XCMSnExp' object with processed m/z data.

See Also

anClique-class

Examples

# NOT RUN {
library(cliqueMS)
mzfile <- system.file("standards.mzXML", package = "cliqueMS")
rawMS <- MSnbase::readMSData(files = mzfile, mode = "onDisk")
cpw <- xcms::CentWaveParam(ppm = 15, peakwidth = c(5,20), snthresh = 10)
msnExp <- xcms::findChromPeaks(rawMS, cpw)
ex.anClique <- createanClique.XCMSnExp(msnExp)
summary(ex.anClique)
# }