plot_phase

Provides convenience function to plot simulation trajectory of result from
one run in 2-D phase space.

A user-friendly workflow for simulating circadian clock gene networks.
Despite decades of advances in modeling circadian clock dynamics,
the lack of accessible tools for reproducible simulation workflows
hinders the integration of computational modeling with experimental studies.
'clockSim' addresses this gap by providing models and helper functions
with step-by-step vignettes. This package opens up system-level exploration
of the circadian clock to wet-lab experimentalists, and future development
will include additional clock architectures and other gene circuit models.
Currently implemented models are based on
Leloup and Goldbeter (1998) <doi:10.1177/074873098128999934>.

Ye Yuan

clockSim

Streamlined Simulation of Circadian Gene Networks

plot_phase function

<dl><dt>df_result</dt>
<dd>Data frame containing results to plot</dd>
<dt>x</dt>
<dd>Column to plot as X-axis</dd>
<dt>y</dt>
<dd>Column to plot as Y-axis</dd>
<dt>time</dt>
<dd>Column to color the trajectory</dd></dl>

Arguments

2-D phase potrait plot — plot_phase

<dl>

<dt>df_result</dt>
<dd>Data frame containing results to plot</dd>


<dt>x</dt>
<dd>Column to plot as X-axis</dd>


<dt>y</dt>
<dd>Column to plot as Y-axis</dd>


<dt>time</dt>
<dd>Column to color the trajectory</dd>

</dl>

plot_phase: 2-D phase potrait plot

Description

Usage

Value

Arguments

Examples