clone.vaf.diff

VAFs of all variants in clone/cluster 1

clone1.vafs:

VAFs of all variants in clone/cluster 2

clone2.vafs:

significant level (if the test produce p.value
less than or equal to p.val =&gt; significantly different)

p.value.cut:

Test if the two clones/clusters have different VAFs, using a
Mann-Whitney U test

clonevol performs clonal ordering and visualization using
the variant clustering results. It uses a bootstrap resampling
technique to estimate the cellular prevalence of the clones within
samples and probabilistically model clonal ordering constraints
(sum and cross rules), hence it tolerates error and variability
in cellular prevalence estimates of individual variants.

clone.vaf.diff: Test if two clones have different VAFs Deprecated!

Description

Usage

Arguments