compare.clone.trees

clonal evolution tree data frame 1

clonal evolution tree data frame 2

if true, match all sample status
(presence/absence/founding) at all nodes to make sure clonal
seeding between samples are preserved.

compare.seeding.models:

Compare two clonal evolution trees to see if they differ
assuming excluded nodes are already excluded, labels are ordered
Return F if they are different, T if they are the same

clonevol performs clonal ordering and visualization using
the variant clustering results. It uses a bootstrap resampling
technique to estimate the cellular prevalence of the clones within
samples and probabilistically model clonal ordering constraints
(sum and cross rules), hence it tolerates error and variability
in cellular prevalence estimates of individual variants.

compare.clone.trees: Compare two clonal evolution trees

Description

Usage

Arguments