compare.clone.trees.removing.leaves

<p>clonal evolution tree data frame 1</p>

<p>Compare two clonal evolution trees to see if they differ
and if they also differ if all termial node (leaves) are removed.
This is useful to determine the number of unique models ignoring
sample specific clones which often give too many models when they
are present and low frequency. This function return 0 if tree match
at leaves, 1 if not match at leave but match when leaves are removed
2 if not matching at internal node levels</p>

clonevol performs clonal ordering and visualization using
the variant clustering results. It uses a bootstrap resampling
technique to estimate the cellular prevalence of the clones within
samples and probabilistically model clonal ordering constraints
(sum and cross rules), hence it tolerates error and variability
in cellular prevalence estimates of individual variants.

Ha X. Dang

compare.clone.trees.removing.leaves: Compare two merged clonal evolution trees

Description

Usage

Arguments