clonevol (version 0.99.11)

estimate.clone.vaf: Estimate VAFs of clones/clusters from clonality analysis result

Description

Estimate VAFs of clones/clusters by calculating the median of the VAFs of all variants provided.

Usage

estimate.clone.vaf(v, cluster.col.name = "cluster", vaf.col.names = NULL,
  vaf.in.percent = TRUE, method = "median", ref.count.col.names = NULL,
  var.count.col.names = NULL, depth.col.names = NULL)

Arguments

v:

data frame containing variants' VAF and clustering

cluster.col.name:

name of the column that hold the cluster ID

vaf.col.names:

names of the columns that hold VAFs

method:

median or mean