clonevol (version 0.99.11)

import.tree: Import trees to clonevol

Description

Import trees (eg. those predicted by other methods) to clonevol thus we can visualize them using clonevol visualization features

Usage

import.tree(tree.file, variant.file)

Arguments

tree.file

A TSV file that contains the tree with minimum 3 labeled columns: clone, parent, sample.with.nonzero.cell.frac.ci. It can also have additional useful columns such as color, and events

variant.file

A TSV file containing the variants, with cluster column, vaf.col.names, etc.

Value

The clonal evolution tree similar to the output of infer.clonal.models function that can be used in multiple plotting functions as if it is the output of infer.clonal.models.

Examples

# NOT RUN {
y = import.tree('trees.tsv', 'variants.tsv')
# }
# NOT RUN {
# }