clonevol (version 0.99.11)

merge.variants.and.events: Merge variants and mapped events onto the same data frame that is more convenient for plotting fancy boxplot of variants with driver events highlighted

Description

Merge variants and mapped.events data frame to a single data frame for fancy boxplot. Generally the columns of the two data frames should be named the same, including (cluster.col.name, vaf.col.names, cn.col.names, loh.col.names, column to highlight (driver), cluster, event). event column should match between the two and events in mapped.events will be excluded from variants data frame before merging them to prevent duplicate

Usage

# S3 method for variants.and.events
merge(variants, mapped.events = NULL,
  cluster.col.name = "cluster", event.col.name = "event", vaf.col.names,
  cn.col.names = c(), loh.col.names = c(), other.col.names = c())

Arguments

variants:

variant data frame

mapped.events:

data frame of events mapped onto cluster/clone that is output assign.events.to.clones()$events