clonevol (version 0.99.11)

plot.cell.population: Plot a tumor as a cloud of cells reflecting the cellular frequencies

Description

Plot a tumor as a cloud of cells reflecting the cellular frequencies

Usage

# S3 method for cell.population
plot(cell.frac, colors, labels = NULL,
  cell.cex = 2, delta = NULL, cell.border.color = "black",
  cell.border.size = 0.1, num.cells = 200, layout = "cloud",
  clone.grouping = "random", frame = FALSE)

Arguments

cell.frac:

cellular fraction of the clones (0-1)

colors:

colors of the clones

num.cells:

number of cells to plot

layout:

"plate" (square) or "cloud" (default = "cloud")

cell.border.color:

see plot.cloud.of.cells

cell.border.size:

see plot.cloud.of.cells

clone.grouping:

see plot.cloud.of.cells

frame:

put a frame around the cell cloud