clordr (version 1.7.0)

cl.rord: Composite Likelihood Calculation for Replciations of Spatial Ordinal Data (for illustration)

Description

cl.rord Calculate the negative composite log-likelihood value for replications of spatial ordinal data at given value of parameter value. Note that this function is not directly used in cle.rord but illustration only.

Usage

cl.rord(theta, response, covar, location, radius = 4)

Arguments

theta

a vector of parameter value

response

a matrix of observation (row: spatial site and column: subject).

covar

regression (design) matrix, including intercepts.

location

a matrix contains spatial location of sites within each subject

radius

radius for selecting pairs for the composite likelihood estimation.

Value

cl.rord returns a list: negative composite log-likelihood, a vector of first-order partial derivatives for theta.

Examples

# NOT RUN {
set.seed(1203)
n.subject <- 10
n.lat <- n.lon <- 10
n.site <- n.lat*n.lon

beta <- c(1,2,-1) # First 1 here is the intercept
midalpha <- c(1.15, 2.18) ; sigma2 <- 0.7 ; phi <- 0.8

true = c(midalpha,beta,sigma2,phi)

Xi = rnorm(n.subject,0,1) ; Xj <- rbinom(n.site,1,0.6)

 VV <- matrix(NA, nrow = n.subject*n.site, ncol = 3)

 for(i in 1:n.subject){ for(j in 1:n.site){
     VV[(i-1)*n.site+j,] <- c(1,Xi[i],Xj[j])
       }
 }

location = cbind(rep(seq(1,n.lat,length=n.lat),n.lat),rep(1:n.lon, each=n.lon))
sim.data <- sim.rord(n.subject, n.site, n.rep = 2, midalpha, beta, sigma2, phi, covar=VV, location)

cl.rord(theta=true,response=sim.data[[1]], covar=VV, location, radius = 4)

# }