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clstutils (version 1.20.0)

Tools for performing taxonomic assignment.

Description

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

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Version

Version

1.20.0

License

GPL-3

Maintainer

Noah Hoffman

Last Published

February 15th, 2017

Functions in clstutils (1.20.0)

classifyPlacements

Taxonomic classification by phylogenetic placement.
taxonomyFromRefpkg

Extract taxonomic information from a refpkg.
prettyTree

Draw an annotated phylogenetic tree.
maxDists

Select a maximally diverse set of items given a distance matrix.
findOutliers

Identify outlier objects given a square distance matrix.
refpkgContents

Read the contents of a collection of reference sequences ("refpkg").
treeDists

Provide objects for determining distances among nodes of a reference tree.
seqdat

Annotation for the Enterococcus sequence data set.
clstutils-package

Sequence based classification and selection of reference sequences.
seqs

Enterococcus sequence data set.