expSetProcess

An object of class expressionSet from the Bioconductor package 'affy'.

This is a convenience function that is used internally to allow the user to pass an expressionSet object from the microarray processing package 'affy'
directly to the <code><a rd-options="" href="/link/cluscomp?package=clusterCons&version=1.2" data-mini-rdoc="clusterCons::cluscomp">cluscomp</a></code> function.

Functions for calculation of robustness measures for clusters and cluster membership based on generating consensus matrices from bootstrapped clustering experiments in which a random proportion of rows of the data set are used in each individual clustering. This allows the user to prioritise clusters and the members of clusters based on their consistency in this regime. The functions allow the user to select several algorithms to use in the re-sampling scheme and with any of the parameters that the algorithm would normally take. See Simpson, T. I., Armstrong, J. D. & Jarman, A. P. (2010) <doi:10.1186/1471-2105-11-590> and Monti, S., Tamayo, P., Mesirov, J. & Golub, T. (2003) <doi:10.1023/a:1023949509487>.

Dr. T. Ian Simpson 

clusterCons

Consensus Clustering using Multiple Algorithms and Parameters

expSetProcess function

This is a convenience function that is used internally to allow the user to pass an expressionSet object from the microarray processing package 'affy'
directly to the <code><a rd-options='' href='cluscomp'>cluscomp</a></code> function.

expSetProcess: Internal function to extract the data from an expressionSet class object from the affy package for use with cluscomp

Description

Usage

Arguments

Value

References