clusterProfiler (version 2.0.1)

compareCluster: Compare gene clusters functional profile Given a list of gene set, this function will compute profiles of each gene cluster.

Description

Compare gene clusters functional profile Given a list of gene set, this function will compute profiles of each gene cluster.

Usage

compareCluster(geneClusters, fun = "enrichGO", ...)

Arguments

geneClusters

a list of entrez gene id.

fun

One of "groupGO", "enrichGO", "enrichKEGG", "enrichDO" or "enrichPathway" .

...

Other arguments.

Value

A clusterProfResult instance.

See Also

compareClusterResult-class, groupGO enrichGO

Examples

data(gcSample)
	xx <- compareCluster(gcSample, fun="enrichKEGG", organism="human", pvalueCutoff=0.05)
	#summary(xx)
	#plot(xx, type="dot", caption="KEGG Enrichment Comparison")